NMR-STAR tag name | _Assembly.Sf_category |
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Description | NMR-STAR name: _Assembly.Sf_category Category assigned to the information in the saveframe. |
Database field name | SfCategory |
SQL Database type | VARCHAR(127) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | yes |
Prompt | Sf category |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.Sf_framecode |
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Description | NMR-STAR name: _Assembly.Sf_framecode A descriptive label for the molecular assembly studied. |
Database field name | SfFramecode |
SQL Database type | VARCHAR(127) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | yes |
Prompt | Molecular assembly label |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.Entry_ID |
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Description | NMR-STAR name: _Assembly.Entry_ID Pointer to '_Entry.ID' |
Database field name | EntryID |
SQL Database type | CHAR(12) |
Part of primary Key | yes |
Foreign Key on table, column | Entry, ID |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | yes |
Prompt | Entry ID |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.Sf_ID |
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Description | NMR-STAR name: _Assembly.Sf_ID An integer value that is the unique identifier for the saveframe that applies across the archive. This value is not stable and may be reassigned each time the data are loaded into a database system. |
Database field name | SfID |
SQL Database type | INTEGER |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | yes This field's data is for internal use only and should be hidden in public versiond of the data. |
Nulls allowed in database? | yes |
Prompt | Sf ID |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.ID |
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Description | NMR-STAR name: _Assembly.ID A code that uniquely identifies the molecular assembly described in the saveframe. |
Database field name | AssemblyID |
SQL Database type | INTEGER |
Part of primary Key | yes |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | yes |
Prompt | Molecular assembly identifier |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.Name |
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Description | NMR-STAR name: _Assembly.Name Brief descriptive name for the molecular assembly studied. |
Database field name | Name |
SQL Database type | VARCHAR(127) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | yes |
Prompt | Molecular assembly name |
Examples | 'p53 tetramer' |
Help text |
NMR-STAR tag name | _Assembly.BMRB_code |
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Description | NMR-STAR name: _Assembly.BMRB_code Unique identifier for the molecular system in the BMRB library of molecular system definitions. |
Database field name | BMRBCode |
SQL Database type | CHAR(12) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | BMRB ID |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.Number_of_components |
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Description | NMR-STAR name: _Assembly.Number_of_components Enter the total number of molecular components (biopolymers and ligands) that comprise the molecular system. |
Database field name | NumberOfComponents |
SQL Database type | INTEGER |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | Total number of biopolymers and ligands |
Examples | 4 |
Help text |
NMR-STAR tag name | _Assembly.Organic_ligands |
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Description | NMR-STAR name: _Assembly.Organic_ligands Enter the total number of organic ligands known to exist in the full molecular system. |
Database field name | OrganicLigands |
SQL Database type | INTEGER |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | Number of organic ligands present |
Examples | 1 |
Help text |
NMR-STAR tag name | _Assembly.Metal_ions |
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Description | NMR-STAR name: _Assembly.Metal_ions Enter the total number of metal ions known to exist in the molecular system |
Database field name | MetalIons |
SQL Database type | INTEGER |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | Number of metal ions present |
Examples | 1 |
Help text |
NMR-STAR tag name | _Assembly.Non_standard_bonds |
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Description | NMR-STAR name: _Assembly.Non_standard_bonds Select 'yes', if the molecular assembly contains covalent bonds such as cross-linking disulfide bonds, non-standard residue-residue bonds, ligand-residue bonds, or metal coordination bonds, etc. |
Database field name | NonStandardBonds |
SQL Database type | VARCHAR(3) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Enumerations | [click for a list of enumerations] This is a closed enumeration. The list of values are the only ones allowed. |
Prompt | Are there cross-linking or other intermolecular bonds in the system |
Examples | yes |
Help text |
NMR-STAR tag name | _Assembly.Ambiguous_conformational_states |
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Description | NMR-STAR name: _Assembly.Ambiguous_conformational_states Answer 'yes', if the molecule contains multiple conformational states (e.g., cis/trans isomerization at one or more proline residues or ligands undergoing conformational equilibria). |
Database field name | AmbiguousConformationalStates |
SQL Database type | VARCHAR(3) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Enumerations | [click for a list of enumerations] This is a closed enumeration. The list of values are the only ones allowed. |
Prompt | Are there ambiguous conformational states in the biopolymers or ligands |
Examples | yes |
Help text |
NMR-STAR tag name | _Assembly.Ambiguous_chem_comp_sites |
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Description | NMR-STAR name: _Assembly.Ambiguous_chem_comp_sites Answer this question yes, if the residue sequence for any of the biopolymers in the molecular system has sites known to be occupied by more than one residue type (e.g., position 12 in a protein is in some cases a serine and other cases a threonine). |
Database field name | AmbiguousChemCompSites |
SQL Database type | VARCHAR(3) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Enumerations | [click for a list of enumerations] This is a closed enumeration. The list of values are the only ones allowed. |
Prompt | Do ambiguous residue sites exist in any biopolymer |
Examples | yes |
Help text |
NMR-STAR tag name | _Assembly.Molecules_in_chemical_exchange |
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Description | NMR-STAR name: _Assembly.Molecules_in_chemical_exchange Select 'yes', if two molecular components in the system are in chemical exchange (e.g., a ligand exists in both the free and bound state). |
Database field name | MoleculesInChemicalExchange |
SQL Database type | VARCHAR(3) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Enumerations | [click for a list of enumerations] This is a closed enumeration. The list of values are the only ones allowed. |
Prompt | Are the polymers or ligands in chemical exchange |
Examples | yes |
Help text |
NMR-STAR tag name | _Assembly.Paramagnetic |
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Description | NMR-STAR name: _Assembly.Paramagnetic Select 'yes', if the molecular system contains a paramagnetic metal ion, organic ligand, or residue with an unpaired electron. |
Database field name | Paramagnetic |
SQL Database type | VARCHAR(3) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | yes |
Enumerations | [click for a list of enumerations] This is a closed enumeration. The list of values are the only ones allowed. |
Prompt | Is the system paramagnetic |
Examples | yes |
Help text |
NMR-STAR tag name | _Assembly.Thiol_state |
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Description | NMR-STAR name: _Assembly.Thiol_state Please select the item that best describes the overal status of the thiol groups in the molecular system. |
Database field name | ThiolState |
SQL Database type | VARCHAR(127) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Enumerations | [click for a list of enumerations] This is an open enumeration. The list of values are only suggestions. They are not enforced. |
Prompt | Molecular assembly thiol state |
Examples | all disulfide bound |
Help text |
NMR-STAR tag name | _Assembly.Molecular_mass |
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Description | NMR-STAR name: _Assembly.Molecular_mass Mass of the molecular system in Daltons. This value may be approximate. |
Database field name | MolecularMass |
SQL Database type | FLOAT |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | Molecular mass |
Examples | 17600 |
Help text |
NMR-STAR tag name | _Assembly.Enzyme_commission_number |
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Description | NMR-STAR name: _Assembly.Enzyme_commission_number If available, enter the Enzyme Commission decimal code (3.4.2.3.1) assigned to the protein or molecular assembly. |
Database field name | EnzymeCommissionNumber |
SQL Database type | VARCHAR(127) |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | Enzyme commission number |
Examples | 2.1.5.8.2 |
Help text |
NMR-STAR tag name | _Assembly.Details |
---|---|
Description | NMR-STAR name: _Assembly.Details Text description for the molecular system studied. |
Database field name | Details |
SQL Database type | TEXT |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | Molecular assembly description |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.DB_query_date |
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Description | NMR-STAR name: _Assembly.DB_query_date Date the database was queried to derive links to the molecular assembly studied. GenBank is the database queried for these links. |
Database field name | DBQueryDate |
SQL Database type | DATETIME year to day |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | DB query date |
Examples | ? |
Help text |
NMR-STAR tag name | _Assembly.DB_query_revised_last_date |
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Description | NMR-STAR name: _Assembly.DB_query_revised_last_date The last date when new links to the molecular assembly were found through the database query. |
Database field name | DBQueryRevisedLastDate |
SQL Database type | DATETIME year to day |
Part of primary Key | no |
Foreign Key on table, column | , |
Saveframe ID | no |
Row Index | no |
Secondary Index | no |
Internal Flag | no |
Nulls allowed in database? | no |
Prompt | DB query revised last date |
Examples | ? |
Help text |