NMR-STAR dictionary: detail of EntityExperimentalSrc table

NMR-STAR dictionary: database table: EntityExperimentalSrc

Detailed description of the fields

_Entity_experimental_src.ID (EntityExperimentalSrcID)

NMR-STAR tag name	_Entity_experimental_src.ID
Description	NMR-STAR name: _Entity_experimental_src.ID An integer value that uniquely identifies each experimental source in the list of experimental sources.
Database field name	EntityExperimentalSrcID
SQL Database type	INTEGER
Part of primary Key	yes
Foreign Key on table, column	,
Saveframe ID	yes: This tag contains the identifier for this saveframe in the entry.
Row Index	yes: This tag contains the index of this row in the loop, which is used when the data is loaded into a database which has a relational model in which ordering doesn't matter
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Experimental source list ID
Examples	?
Help text

_Entity_experimental_src.Entity_ID (EntityID)

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NMR-STAR tag name	_Entity_experimental_src.Entity_ID
Description	NMR-STAR name: _Entity_experimental_src.Entity_ID Pointer to '_Entity.ID'
Database field name	EntityID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Entity ID
Examples	?
Help text

_Entity_experimental_src.Entity_label (EntityLabel)

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NMR-STAR tag name	_Entity_experimental_src.Entity_label
Description	NMR-STAR name: _Entity_experimental_src.Entity_label Pointer to a saveframe of the category 'entity.' This is the label assigned to the molecular entity by the author when completing the molecular entity portion of the deposition.
Database field name	EntityLabel
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	Entity, Sf_framecode
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Label for a molecular entity
Examples	lysozyme
Help text

_Entity_experimental_src.Entity_chimera_segment_ID (EntityChimeraSegmentID)

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NMR-STAR tag name	_Entity_experimental_src.Entity_chimera_segment_ID
Description	NMR-STAR name: _Entity_experimental_src.Entity_chimera_segment_ID Pointer to '_Entity_chimera_segment.ID'
Database field name	EntityChimeraSegmentID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_chimera_segment, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	The ID for a molecular entity fragment.
Examples	?
Help text

_Entity_experimental_src.Production_method (ProductionMethod)

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NMR-STAR tag name	_Entity_experimental_src.Production_method
Description	NMR-STAR name: _Entity_experimental_src.Production_method The laboratory method used to obtain the biopolymers studied. This could include one of the following; recombinant technology, chemical synthesis, purified from the natural source, and others.
Database field name	ProductionMethod
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Enumerations	[click for a list of enumerations] This is an open enumeration. The list of values are only suggestions. They are not enforced.
Prompt	Production method
Examples	recombinant technology
Help text

_Entity_experimental_src.Host_org_scientific_name (HostOrgScientificName)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_scientific_name
Description	NMR-STAR name: _Entity_experimental_src.Host_org_scientific_name The scientific name of the organism that served as host for the production of the entity.
Database field name	HostOrgScientificName
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Enumerations	[click for a list of enumerations] This is an open enumeration. The list of values are only suggestions. They are not enforced.
Prompt	Host organism's scientific name
Examples	Escherichia coli
Help text

_Entity_experimental_src.Host_org_name_common (HostOrgNameCommon)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_name_common
Description	NMR-STAR name: _Entity_experimental_src.Host_org_name_common Common name for the organism used as a host in producing a biopolymer.
Database field name	HostOrgNameCommon
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Host organism name common
Examples	E. coli
Help text

_Entity_experimental_src.Host_org_details (HostOrgDetails)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_details
Description	NMR-STAR name: _Entity_experimental_src.Host_org_details Additional information or comments regarding the host organism.
Database field name	HostOrgDetails
SQL Database type	TEXT
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Host organism details
Examples	?
Help text

_Entity_experimental_src.Host_org_NCBI_taxonomy_ID (HostOrgNCBITaxonomyID)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_NCBI_taxonomy_ID
Description	NMR-STAR name: _Entity_experimental_src.Host_org_NCBI_taxonomy_ID Unique ID assigned by the NCBI to organisms.
Database field name	HostOrgNCBITaxonomyID
SQL Database type	CHAR(12)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	NCBI taxonomy ID
Examples	?
Help text

_Entity_experimental_src.Host_org_genus (HostOrgGenus)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_genus
Description	NMR-STAR name: _Entity_experimental_src.Host_org_genus Genus of the host organism
Database field name	HostOrgGenus
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Genus of host organism
Examples	Escherichia
Help text

_Entity_experimental_src.Host_org_species (HostOrgSpecies)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_species
Description	NMR-STAR name: _Entity_experimental_src.Host_org_species Scientific name for the species of the organism as defined by NCBI taxonomists whenever possible.
Database field name	HostOrgSpecies
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Species of host organism
Examples	coli
Help text

_Entity_experimental_src.Host_org_strain (HostOrgStrain)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_strain
Description	NMR-STAR name: _Entity_experimental_src.Host_org_strain The scientific name for the strain of an organism.
Database field name	HostOrgStrain
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Strain of the host organism
Examples	K12
Help text

_Entity_experimental_src.Host_org_variant (HostOrgVariant)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_variant
Description	NMR-STAR name: _Entity_experimental_src.Host_org_variant Name used to classify the variant of an organism.
Database field name	HostOrgVariant
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Variant strain of the host organism
Examples	?
Help text

_Entity_experimental_src.Host_org_subvariant (HostOrgSubvariant)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_subvariant
Description	NMR-STAR name: _Entity_experimental_src.Host_org_subvariant In the hierarchy of organism nomenclature, the name or code designating a subvariant of the organism used to express the entity. These may specific hosts designed with mutations to knock out proteases or other enzymes deleterious to the production of the entity.
Database field name	HostOrgSubvariant
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Subvariant of the host organism
Examples
Help text

_Entity_experimental_src.Host_org_organ (HostOrgOrgan)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_organ
Description	NMR-STAR name: _Entity_experimental_src.Host_org_organ Cell lines used as hosts in producing macromolecules often originate from a particular organ (e.g. chinese hamster ovary cells). If this is true for the system used in this study please enter the name of the organ that was the source for the cell line used.
Database field name	HostOrgOrgan
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Organ of the host organism
Examples	?
Help text

_Entity_experimental_src.Host_org_tissue (HostOrgTissue)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_tissue
Description	NMR-STAR name: _Entity_experimental_src.Host_org_tissue The tissue from an organism that is the natural or experimental source of the molecule.
Database field name	HostOrgTissue
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Tissue of the host organism
Examples	?
Help text

_Entity_experimental_src.Host_org_tissue_fraction (HostOrgTissueFraction)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_tissue_fraction
Description	NMR-STAR name: _Entity_experimental_src.Host_org_tissue_fraction The fraction of the tissue which expressed the molecule.
Database field name	HostOrgTissueFraction
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Tissue fraction
Examples
Help text

_Entity_experimental_src.Host_org_cell_line (HostOrgCellLine)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_cell_line
Description	NMR-STAR name: _Entity_experimental_src.Host_org_cell_line The name for the cell line used in producing the biopolymer.
Database field name	HostOrgCellLine
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Cell line
Examples	hela
Help text

_Entity_experimental_src.Host_org_cell_type (HostOrgCellType)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_cell_type
Description	NMR-STAR name: _Entity_experimental_src.Host_org_cell_type Specific type of cell if used to produce the biopolymer.
Database field name	HostOrgCellType
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Cell type
Examples	?
Help text

_Entity_experimental_src.Host_org_cellular_location (HostOrgCellularLocation)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_cellular_location
Description	NMR-STAR name: _Entity_experimental_src.Host_org_cellular_location Identifies the location inside (or outside) the cell which expressed the molecule. Proteins may be excreted from a production host or produced in the periplasmic space as opposed to the cytoplasm.
Database field name	HostOrgCellularLocation
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Cellular location
Examples	cytoplasm
Help text

_Entity_experimental_src.Host_org_organelle (HostOrgOrganelle)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_organelle
Description	NMR-STAR name: _Entity_experimental_src.Host_org_organelle Specific organelle which expressed the molecule.
Database field name	HostOrgOrganelle
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Organelle
Examples	mitochondria
Help text

_Entity_experimental_src.Host_org_gene (HostOrgGene)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_gene
Description	NMR-STAR name: _Entity_experimental_src.Host_org_gene Specific gene which expressed the molecule.
Database field name	HostOrgGene
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Gene
Examples	HIV-1 pol
Help text

_Entity_experimental_src.Host_org_culture_collection (HostOrgCultureCollection)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_culture_collection
Description	NMR-STAR name: _Entity_experimental_src.Host_org_culture_collection Culture collection of the expression system.
Database field name	HostOrgCultureCollection
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Culture collection
Examples
Help text

_Entity_experimental_src.Host_org_ATCC_number (HostOrgATCCNumber)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_ATCC_number
Description	NMR-STAR name: _Entity_experimental_src.Host_org_ATCC_number Organism culture number defined in the American Type Culture Collection.
Database field name	HostOrgATCCNumber
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	ATCC number
Examples	27355
Help text

_Entity_experimental_src.Vector_type (VectorType)

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NMR-STAR tag name	_Entity_experimental_src.Vector_type
Description	NMR-STAR name: _Entity_experimental_src.Vector_type The kind of biological vector used to insert a gene into a host organism for the production of a biological molecule studied in the entry.
Database field name	VectorType
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Enumerations	[click for a list of enumerations] This is an open enumeration. The list of values are only suggestions. They are not enforced.
Prompt	Type of vector used (if applicable)
Examples	'plasmid'
Help text

_Entity_experimental_src.PDBview_host_org_vector_name (PDBviewHostOrgVectorName)

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NMR-STAR tag name	_Entity_experimental_src.PDBview_host_org_vector_name
Description	NMR-STAR name: _Entity_experimental_src.PDBview_host_org_vector_name Enter the name of a vector used to insert a gene into a eukaryotic host to express the biopolymer used in the experiments.
Database field name	PDBviewHostOrgVectorName
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Vector name
Examples	baculovirus
Help text

_Entity_experimental_src.PDBview_plasmid_name (PDBviewPlasmidName)

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NMR-STAR tag name	_Entity_experimental_src.PDBview_plasmid_name
Description	NMR-STAR name: _Entity_experimental_src.PDBview_plasmid_name Enter the name of a plasmid used in a bacterial system to generate the protein or nucleic acid used in the experiments.
Database field name	PDBviewPlasmidName
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Plasmid name
Examples	pBR322
Help text

_Entity_experimental_src.Vector_name (VectorName)

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NMR-STAR tag name	_Entity_experimental_src.Vector_name
Description	NMR-STAR name: _Entity_experimental_src.Vector_name Name given to the vector used to insert a gene into a host organism.
Database field name	VectorName
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Vector name (if applicable)
Examples	pBR322
Help text

_Entity_experimental_src.Vector_details (VectorDetails)

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NMR-STAR tag name	_Entity_experimental_src.Vector_details
Description	NMR-STAR name: _Entity_experimental_src.Vector_details Text comments regarding the vector used to produce the biopolymer.
Database field name	VectorDetails
SQL Database type	TEXT
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Vector details
Examples	?
Help text

_Entity_experimental_src.Vendor_name (VendorName)

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NMR-STAR tag name	_Entity_experimental_src.Vendor_name
Description	NMR-STAR name: _Entity_experimental_src.Vendor_name Commercial or academic vendor that supplied the defined item.
Database field name	VendorName
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Vendor name
Examples	Aldrich
Help text

_Entity_experimental_src.Host_org_dev_stage (HostOrgDevStage)

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NMR-STAR tag name	_Entity_experimental_src.Host_org_dev_stage
Description	NMR-STAR name: _Entity_experimental_src.Host_org_dev_stage A string to indicate the life-cycle or cell development cycle in which the gene is expressed and the mature protein is active.
Database field name	HostOrgDevStage
SQL Database type	TEXT
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Development stage details
Examples
Help text

_Entity_experimental_src.Details (Details)

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NMR-STAR tag name	_Entity_experimental_src.Details
Description	NMR-STAR name: _Entity_experimental_src.Details Additional information relevant to the data in the current saveframe or to a specific data item is entered as a value to this tag. The information entered must supplement information already present. Whenever possible data should associated with specific data tags and not included in the value to a '_Details' tag.
Database field name	Details
SQL Database type	TEXT
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Details
Examples	?
Help text

_Entity_experimental_src.Citation_ID (CitationID)

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NMR-STAR tag name	_Entity_experimental_src.Citation_ID
Description	NMR-STAR name: _Entity_experimental_src.Citation_ID Pointer to '_Citation.ID'
Database field name	CitationID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Citation, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Citation ID
Examples	?
Help text

_Entity_experimental_src.Citation_label (CitationLabel)

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NMR-STAR tag name	_Entity_experimental_src.Citation_label
Description	NMR-STAR name: _Entity_experimental_src.Citation_label Pointer to a saveframe of the category 'citation.' The citation would describe how, for example, the vector was constructed and the host organism picked.
Database field name	CitationLabel
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	Citation, Sf_framecode
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Citation label
Examples	?
Help text

_Entity_experimental_src.Sf_ID (SfID)

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NMR-STAR tag name	_Entity_experimental_src.Sf_ID
Description	NMR-STAR name: _Entity_experimental_src.Sf_ID Pointer to '_Entity_experimental_src_list.Sf_ID'
Database field name	SfID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_experimental_src_list, Sf_ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	yes This field's data is for internal use only and should be hidden in public versiond of the data.
Nulls allowed in database?	yes
Prompt	Sf ID
Examples	?
Help text

_Entity_experimental_src.Entry_ID (EntryID)

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NMR-STAR tag name	_Entity_experimental_src.Entry_ID
Description	NMR-STAR name: _Entity_experimental_src.Entry_ID Pointer to '_Entry.ID'
Database field name	EntryID
SQL Database type	CHAR(12)
Part of primary Key	yes
Foreign Key on table, column	Entity_experimental_src_list, Entry_ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Entry ID
Examples	?
Help text

_Entity_experimental_src.Entity_experimental_src_list_ID (EntityExperimentalSrcListID)

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NMR-STAR tag name	_Entity_experimental_src.Entity_experimental_src_list_ID
Description	NMR-STAR name: _Entity_experimental_src.Entity_experimental_src_list_ID Pointer to '_Entity_experimental_src_list.ID'
Database field name	EntityExperimentalSrcListID
SQL Database type	INTEGER
Part of primary Key	yes
Foreign Key on table, column	Entity_experimental_src_list, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Entity experimental src list ID
Examples	?
Help text