NMR-STAR dictionary: detail of SecondaryStruct table

NMR-STAR dictionary: database table: SecondaryStruct

Detailed description of the fields

_Secondary_struct.ID (SecondaryStructID)

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NMR-STAR tag name	_Secondary_struct.ID
Description	NMR-STAR name: _Secondary_struct.ID An integer value that uniquely identifies the reported secondary structure element.
Database field name	SecondaryStructID
SQL Database type	INTEGER
Part of primary Key	yes
Foreign Key on table, column	,
Saveframe ID	yes: This tag contains the identifier for this saveframe in the entry.
Row Index	yes: This tag contains the index of this row in the loop, which is used when the data is loaded into a database which has a relational model in which ordering doesn't matter
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	ID
Examples	?
Help text

_Secondary_struct.Conf_family_coord_set_ID (ConfFamilyCoordSetID)

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NMR-STAR tag name	_Secondary_struct.Conf_family_coord_set_ID
Description	NMR-STAR name: _Secondary_struct.Conf_family_coord_set_ID Pointer to '_Conformer_family_coord_set.ID'
Database field name	ConfFamilyCoordSetID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Conformer_family_coord_set, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Conf family coord set ID
Examples	?
Help text

_Secondary_struct.Conf_family_coord_set_label (ConfFamilyCoordSetLabel)

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NMR-STAR tag name	_Secondary_struct.Conf_family_coord_set_label
Description	NMR-STAR name: _Secondary_struct.Conf_family_coord_set_label Pointer to a saveframe of the category 'conformer_family'
Database field name	ConfFamilyCoordSetLabel
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	Conformer_family_coord_set, Sf_framecode
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Conf family coord set label
Examples	?
Help text

_Secondary_struct.Entity_assembly_ID (EntityAssemblyID)

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NMR-STAR tag name	_Secondary_struct.Entity_assembly_ID
Description	NMR-STAR name: _Secondary_struct.Entity_assembly_ID Pointer to '_Entity_assembly.ID'
Database field name	EntityAssemblyID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_assembly, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Entity assembly ID
Examples	?
Help text

_Secondary_struct.Entity_ID (EntityID)

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NMR-STAR tag name	_Secondary_struct.Entity_ID
Description	NMR-STAR name: _Secondary_struct.Entity_ID Pointer to '_Entity.ID'
Database field name	EntityID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Entity ID
Examples	?
Help text

_Secondary_struct.Comp_index_ID_start (CompIndexIDStart)

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NMR-STAR tag name	_Secondary_struct.Comp_index_ID_start
Description	NMR-STAR name: _Secondary_struct.Comp_index_ID_start Pointer to '_Entity_comp_index.ID'
Database field name	CompIndexIDStart
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_comp_index, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Comp index ID start
Examples	24
Help text

_Secondary_struct.Comp_index_ID_end (CompIndexIDEnd)

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NMR-STAR tag name	_Secondary_struct.Comp_index_ID_end
Description	NMR-STAR name: _Secondary_struct.Comp_index_ID_end Pointer to '_Entity_comp_index.ID'
Database field name	CompIndexIDEnd
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_comp_index, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Comp index ID end
Examples	31
Help text

_Secondary_struct.Seq_ID_start (SeqIDStart)

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NMR-STAR tag name	_Secondary_struct.Seq_ID_start
Description	NMR-STAR name: _Secondary_struct.Seq_ID_start Sequence number for the first chemical component in the structure element. Pointer to '_PDBX_poly_seq_scheme.Seq_ID'
Database field name	SeqIDStart
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_poly_seq, Num
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Seq ID start
Examples	24
Help text

_Secondary_struct.Seq_ID_end (SeqIDEnd)

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NMR-STAR tag name	_Secondary_struct.Seq_ID_end
Description	NMR-STAR name: _Secondary_struct.Seq_ID_end Sequence number for the Last chemical component in the structure element. Pointer to '_PDBX_poly_seq_scheme.Seq_ID'
Database field name	SeqIDEnd
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Entity_poly_seq, Num
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Seq ID end
Examples	31
Help text

_Secondary_struct.Auth_seq_ID_start (AuthSeqIDStart)

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NMR-STAR tag name	_Secondary_struct.Auth_seq_ID_start
Description	NMR-STAR name: _Secondary_struct.Auth_seq_ID_start An alternative identifier for Seq_id that may be provided by an author in order to match that used in the publication that describes the experimental data. Note that the value is not required to be a number and does not need to correspond to the value for Seq_ID or Comp_index_ID.
Database field name	AuthSeqIDStart
SQL Database type	VARCHAR(15)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Auth seq ID start
Examples	-3
Help text

_Secondary_struct.Auth_seq_ID_end (AuthSeqIDEnd)

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NMR-STAR tag name	_Secondary_struct.Auth_seq_ID_end
Description	NMR-STAR name: _Secondary_struct.Auth_seq_ID_end An alternative identifier for Seq_id that may be provided by an author in order to match that used in the publication that describes the experimental data. Note that the value is not required to be a number and does not need to correspond to the value for Seq_ID or Comp_index_ID.
Database field name	AuthSeqIDEnd
SQL Database type	VARCHAR(15)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Auth seq ID end
Examples	-3
Help text

_Secondary_struct.Name (Name)

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NMR-STAR tag name	_Secondary_struct.Name
Description	NMR-STAR name: _Secondary_struct.Name An author defined name for the tertiary structure element.
Database field name	Name
SQL Database type	VARCHAR(127)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Name
Examples	Helix A
Help text

_Secondary_struct.Code (Code)

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NMR-STAR tag name	_Secondary_struct.Code
Description	NMR-STAR name: _Secondary_struct.Code Code defining the type of secondary structure element that is being defined.
Database field name	Code
SQL Database type	VARCHAR(15)
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Code
Examples	?
Help text

_Secondary_struct.Details (Details)

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NMR-STAR tag name	_Secondary_struct.Details
Description	NMR-STAR name: _Secondary_struct.Details Text providing additional information concerning the reported secondary structure element.
Database field name	Details
SQL Database type	TEXT
Part of primary Key	no
Foreign Key on table, column	,
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	no
Prompt	Details
Examples	?
Help text

_Secondary_struct.Sf_ID (SfID)

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NMR-STAR tag name	_Secondary_struct.Sf_ID
Description	NMR-STAR name: _Secondary_struct.Sf_ID Pointer to '_Secondary_struct_list.Sf_ID'
Database field name	SfID
SQL Database type	INTEGER
Part of primary Key	no
Foreign Key on table, column	Secondary_struct_list, Sf_ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	yes This field's data is for internal use only and should be hidden in public versiond of the data.
Nulls allowed in database?	yes
Prompt	Sf ID
Examples	?
Help text

_Secondary_struct.Entry_ID (EntryID)

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NMR-STAR tag name	_Secondary_struct.Entry_ID
Description	NMR-STAR name: _Secondary_struct.Entry_ID Pointer to '_Entry.ID'
Database field name	EntryID
SQL Database type	CHAR(12)
Part of primary Key	yes
Foreign Key on table, column	Entry, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Entry ID
Examples	?
Help text

_Secondary_struct.Secondary_struct_list_ID (SecondaryStructListID)

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NMR-STAR tag name	_Secondary_struct.Secondary_struct_list_ID
Description	NMR-STAR name: _Secondary_struct.Secondary_struct_list_ID Pointer to '_Secondary_struct_list.ID'
Database field name	SecondaryStructListID
SQL Database type	INTEGER
Part of primary Key	yes
Foreign Key on table, column	Secondary_struct_list, ID
Saveframe ID	no
Row Index	no
Secondary Index	no
Internal Flag	no
Nulls allowed in database?	yes
Prompt	Secondary struct list ID
Examples	?
Help text